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Minimac3 Usage (view source)

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Command Line Options:

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Reference Haplotypes : --refHaps [], --passOnly, --rsid

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Reference Haplotypes : --refHaps [], --passOnly, --rsid

Target Haplotypes : --haps []

Output Parameters : --prefix [Minimac3.Output], --processReference,

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Starting Parameters : --rec [], --err []

Estimation Parameters : --rounds [5], --states [200]

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Other Parameters : --log, --help, --cpus [1], --params

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Other Parameters : --log, --lowMemory, --help, --cpus [1], --params

PhoneHome : --noPhoneHome, --phoneHomeThinning [50]

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