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#profile mendelian errors found in vt.genotypes.bcf, generate [[media:mendel.pdf|tables]] in the directory mendel, requires pdflatex.
#profile mendelian errors found in vt.genotypes.bcf, generate [[media:mendel.pdf|tables]] in the directory mendel, requires pdflatex.
vt profile_mendelian vt.genotypes.bcf -p trios.ped -x mendel
vt profile_mendelian vt.genotypes.bcf -p trios.ped -x mendel
pedigree file format is described in [http://csg.sph.umich.edu//abecasis/merlin/tour/input_files.html here]
#this is a sample output for mendelian error profiling.
#this is a sample output for mendelian error profiling.
