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Vt

1,092 bytes added, 12:21, 7 July 2016
Installation
#you can test the build
4. make test
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An expected output when all is well for the tests is shown here. (click expand =>)
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user@server:~/vt$ make test
test/test.sh
++++++++++++++++++++++
Tests for vt normalize
++++++++++++++++++++++
testing normalize
output VCF file : ok
output logs : ok
+++++++++++++++++++++++++++++++
Tests for vt decompose_blocksub
+++++++++++++++++++++++++++++++
testing decompose_blocksub of even-length blocks
output VCF file : ok
output logs : ok
testing decompose_blocksub with alignment
output VCF file : ok
output logs : ok
testing decompose_blocksub of phased even-length blocks
output VCF file : ok
output logs : ok
++++++++++++++++++++++
Tests for vt decompose
++++++++++++++++++++++
testing decompose for a triallelic variant
output VCF file : ok
output logs : ok <br>
Passed tests : 5 / 5
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Building has been tested on Linux and Mac systems on gcc 4.8.1 and clang 3.4. <br>
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