1,102
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Extract INFO fields to a tab delimited file
<div class=" mw-collapsible mw-collapsed">
<div class=" mw-collapsible mw-collapsed">
#tab lobstr.bcf
#converts in.bcf to tab format with selected INFO fields
vt validate lobstr.bcf
vt info2tab in.bcf -v -t EX_RL,FZ_RL,MDUST,LOBSTR,VNTRSEEK,RMSK,EX_REPEAT_TRACT
<div style="height:6em; overflow:auto; border: 2px solid #FFF">
<div style="height:6em; overflow:auto; border: 2px solid #FFF">
</div>
</div>
CHROM POS REF ALT N_ALLELE EX_RL FZ_RL MDUST LOBSTR VNTRSEEK RMSK
CHROM POS REF ALT N_ALLELE EX_RL FZ_RL MDUST LOBSTR VNTRSEEK RMSK EX_REPEAT_TRACT_1 EX_REPEAT_TRACT_2
20 17548608 A AC 2 13 1 1 0 0
20 17548608 A AC 2 2 13 1 1 0 0 17548608 17548608
20 17548608 AAAAG A 4 13 1 1 0 0
20 17548608 AAAAG A 2 4 13 1 1 0 0 17548609 17548609
<div class="mw-collapsible-content">
<div class="mw-collapsible-content">
