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GREGOR (view source)

Revision as of 17:06, 15 November 2016

746 bytes added ,  17:06, 15 November 2016
→‎Download reference files
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== Download reference files ==
 
== Download reference files ==
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ownload the reference files from this link [http://csg.sph.umich.edu/GREGOR/  GREGOR Download].
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Download the reference files from this link [http://csg.sph.umich.edu/GREGOR/  GREGOR Download], then un-package the file
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Reference files is created by populations(AFR, AMR, ASN, EUR, SAN) from 1000G data.
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  tar xzvf GREGOR.ref.tar.gz
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If your LD r2 threshold equals or greater than 0.7, please download reference files from category: LD window size = 1MB; LD r2 ≥ 0.7.
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If your LD r2 threshold equals or greater than 0.2, please download reference files from category: LD window size = 1MB; LD r2 ≥ 0.2.
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After download reference files, you need merge the part files to one gz file. Use the command line likes:
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  cat \
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    GREGOR.AFR.ref.r2.greater.than.0.2.tar.gz.part.00 \
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    GREGOR.AFR.ref.r2.greater.than.0.2.tar.gz.part.01 \
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    GREGOR.AFR.ref.r2.greater.than.0.2.tar.gz.part.02 \
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    GREGOR.AFR.ref.r2.greater.than.0.2.tar.gz.part.03 \
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    GREGOR.AFR.ref.r2.greater.than.0.2.tar.gz.part.04 \
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    > GREGOR.AFR.ref.r2.greater.than.0.2.tar.gz
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After unzip, you will get 47 reference files in the directory "~/ref"
 
After unzip, you will get 47 reference files in the directory "~/ref"
  
Jchen
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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/14423"

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