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## KEY ELEMENTS TO CONFIGURE : NEED TO MODIFY
## KEY ELEMENTS TO CONFIGURE : NEED TO MODIFY
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INDEX_SNP_FILE = /workingdirectory/example/example.index.snps.rsid.list.txt ## e.g. /workingdirectory/example/example.index.snps.rsid.list.txt
INDEX_SNP_FILE = /workingdirectory/example/example.index.snps.rsid.list.txt
BED_FILE_INDEX = /workingdirectory/example/example.bed.file.index ## e.g. /workingdirectory/example/example.bed.file.index
BED_FILE_INDEX = /workingdirectory/example/example.bed.file.index
REF_DIR = /workingdirectory/ref/ ## reference directory
REF_DIR = /workingdirectory/ref/
R2THRESHOLD = 0.7
R2THRESHOLD = 0.7
LDWINDOWSIZE = 1000000
LDWINDOWSIZE = 1000000
