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Vt

105 bytes added, 17:02, 27 December 2016
Filters
Biallelic variants involving 1bp variants : LEN==1&&N_ALLELE==2
Variants with explicit sequences with no Ns : ~VARIANT_CONTAINS_N
 
REF field
REF
 
ALT field
ALT
QUAL field
INFO fields
INFO.<tag>
Alternative allele is AC : ALT=='AC'
Passed biallelic SNPs only : PASS&&VTYPE==SNP&&N_ALLELE==2
Passed Common biallelic SNPs only : PASS&&VTYPE==SNP&&N_ALLELE==2&&INFO.AF>0.005
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