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Vt
,→Remove info tags
Removes INFO tags from a VCF file
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#removes the INFO tags OLD_VARIANT, ENTROPY, PSCORE and COMP
vt rminfo exact.del.bcf -t OLD_VARIANT,ENTROPY,PSCORE,COMP -o rm.bcf
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usage : vt rminfo [options] <in.vcf>
options : -o output VCF file [-]
-q do not print options and summary [false]
-t list of info tags to be removed []
-I file containing list of intervals []
-i intervals []
-? displays help
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=== Remove overlap ===
description : Removes overlapping variants in a VCF file by tagging such variants with the FILTER flag overlap.
usage : vt remove_overlap [options] <in.vcf>
options : -o output VCF file [-]
-I file containing list of intervals []
-i intervals []
-? displays help
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#removes the INFO tags OLD_VARIANT, ENTROPY, PSCORE and COMP
