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=== Filter ===
Filters variants in a VCF file
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#adds a filter tag "refA" for variants where the REF column is a A sequence.
vt filter in.bcf -f "REF=='A'" -d "refA"
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usage : vt filter [options] <in.vcf>
options : -x clear filter [false]
-f filter expression []
-d filter tag description []
-t filter tag []
-o output VCF file [-]
-I file containing list of intervals []
-i intervals
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=== Filter overlap ===
=== Filter overlap ===
Tags overlapping variants in a VCF file with the FILTER flag overlap.
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