From Genome Analysis Wiki
→Classes in the FASTQ Portion of Library
| Class used for reading/validating a fastq file.
www.sph.umich.edu/ csg/mktrost/doxygen/current/classBaseCount.html BaseCount]</code>
| Wrapper around an array that has one index per base and an extra index for a total count of all bases. This class is used to keep a count of the number of times each index has occurred. It can print a percentage of the occurrence of each base against the total number of bases.
www.sph.umich.edu/ csg/mktrost/doxygen/current/classBaseComposition.html BaseComposition]</code>
| Class that tracks the composition of base by read location.
www.sph.umich.edu/ csg/mktrost/doxygen/current/classFastQStatus.html FastQStatus]</code>
| Status for FastQ operations.
== FASTQ Output ==