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From Genome Analysis Wiki
MaCH FAQ
,→Where can I find combined HapMap reference files?
== Where can I find combined HapMap reference files? ==
You can find them at http://wwwcsg.sph.umich.edu/csg/yli/mach/download/HapMap-r21.html or on the HapMap Project website.
== Where can I find HapMap III / 1000 Genomes reference files? ==