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MaCH FAQ

3 bytes removed, 11:21, 2 February 2017
How do I get reference files for an region of interest?
== How do I get reference files for an region of interest? ==
Note that you do not need to extract regional pedigree files for your own samples because SNPs in pedigree but not in reference will be automatically discarded. <br> 1. For HapMapII format, download haplotypes from http://wwwcsg.sph.umich.edu/csg/ylwtx/HapMapForMach.tgz <br> 2. For MACH format, you can do the following:
*First, find the first and last SNP in the region you are interested in. Say "rsFIRST" and "rsLAST", defined according to position.
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