Changes

== Example Showing the Whole Pipeline ==

== Example Showing the Whole Pipeline ==

In the thunder [https://www.sph.umich.edu/csg/yli/thunder/thunder.V011.source.tgz thunder_glf_freq] tarball, you can find under example/thunder/ folder, input files extracted from real data and a C-shell script that executes the whole analysis pipeline.

In the thunder [https://csg.sph.umich.edu//yli/thunder/thunder.V011.source.tgz thunder_glf_freq] tarball, you can find under example/thunder/ folder, input files extracted from real data and a C-shell script that executes the whole analysis pipeline.

== Ligate Haplotypes ==

== Ligate Haplotypes ==