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Thunder
,→Example Showing the Whole Pipeline
== Example Showing the Whole Pipeline ==
In the thunder [https://wwwcsg.sph.umich.edu/csg/yli/thunder/thunder.V011.source.tgz thunder_glf_freq] tarball, you can find under example/thunder/ folder, input files extracted from real data and a C-shell script that executes the whole analysis pipeline.
== Ligate Haplotypes ==