Changes

=== Required Input Files ===

=== Required Input Files ===

==== Pedigree file (.ped) ====

==== Pedigree file (.ped) ====

File fed to -ped option, in [[Merlin]] format pedigree file. For details of the Merlin file format, see the Merlin tutorial [http://www.sph.umich.edu/csg/abecasis/Merlin/tour/input_files.html]. <br>

File fed to -ped option, in [[Merlin]] format pedigree file. For details of the Merlin file format, see the Merlin tutorial [http://csg.sph.umich.edu//abecasis/Merlin/tour/input_files.html]. <br>

Within each file, markers should be stored by chromosome position. Alleles should be stored in the forward strand and can be encoded as 'A', 'C', 'G' or 'T' (there is no need to use numeric identifiers for each allele). <br>

Within each file, markers should be stored by chromosome position. Alleles should be stored in the forward strand and can be encoded as 'A', 'C', 'G' or 'T' (there is no need to use numeric identifiers for each allele). <br>

==== Marker information (.dat) file ====

==== Marker information (.dat) file ====

File fed to -dat option, in [[Merlin]] format marker information file. For details of the Merlin file format, see the Merlin tutorial [http://www.sph.umich.edu/csg/abecasis/Merlin/tour/input_files.html]. <br>

File fed to -dat option, in [[Merlin]] format marker information file. For details of the Merlin file format, see the Merlin tutorial [http://csg.sph.umich.edu//abecasis/Merlin/tour/input_files.html]. <br>

=== Optional Input Files ===

=== Optional Input Files ===