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TabAnno

21 bytes removed, 11:55, 2 February 2017
Quick tutorial
Required files:
* [http://wwwcsg.sph.umich.edu/csg/zhanxw/software/anno/resources/hs37d5.fa hs37d5.fa] Reference genome in NCBI build 37 (you also need to download [http://wwwcsg.sph.umich.edu/csg/zhanxw/software/anno/resources/hs37d5.fa.fai hs37d5.fai] )
* [http://wwwcsg.sph.umich.edu/csg/zhanxw/software/anno/resources/refFlat_hg19.txt.gz refFlag_hg19.txt.gz] Gene database in refFlat format (from UCSC website). You can also use [http://wwwcsg.sph.umich.edu/csg/zhanxw/software/anno/resources/refFlat.gencode.v7.gz Gencode version 7] or [http://wwwcsg.sph.umich.edu/csg/zhanxw/software/anno/resources/refFlat.gencode.v11.gz Gencode version 11].
* [http://wwwcsg.sph.umich.edu/csg/zhanxw/software/anno/codon.txt codon.txt] Human codon table.
* [http://wwwcsg.sph.umich.edu/csg/zhanxw/software/anno/priority.txt priority.txt] Priority file, which determines wich annotation type is more important
Outputs:
96
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