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Thunder

10 bytes added, 11:08, 21 February 2017
(step 2) Genotype/haplotype calling using thunder thunder_glf_freq
Notes:
(1) The program thunder used in step 2 is an extension of MaCH, the genotype imputation software we have previously developed. For details regarding the shared options, please check out [http://sph.umich.edu/csg/yliabecasis/mach/index.html MaCH website] and [http://genome.sph.umich.edu/wiki/Mach MaCH wiki].
(2) Check out example files and command lines under examples/thunder/ in the thunder package [https://sph.umich.edu/csg/yliabecasis/thunder/thunder.V011.source.tgz thunder_glf_freq].
== Example Showing the Whole Pipeline ==
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