Changes

== Converting Chromosome X Files ==

== Converting Chromosome X Files ==

No extra parameter is necessary for converting chromosome X on the pseudo-autosomal region. For the non-PAR region:

For the pseudo-autosomal region (PAR) on chromosome X, no extra parameter is necessary. For the non-PAR region, please ensure the following:

* If your input VCF dosage file has males as diploids, then just add handle <code>--samePoidy</code>. This will not generate sex information in the output PLINK <code>.map</code> file.

* If your input VCF dosage file has males as diploids, then just add handle <code>--samePoidy</code>. This will not generate sex information in the output PLINK <code>.map</code> file.