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37 bytes added ,  01:13, 12 July 2017
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| <code>--tag</code>
 
| <code>--tag</code>
 
|  
 
|  
indicates the FORMAT tag of the VCF from which to import the imputed dosages:
+
indicates the FORMAT tag of the VCF file from which to import the imputed dosages:
 
*<code>DS</code>: imputed values from dosages (default)
 
*<code>DS</code>: imputed values from dosages (default)
 
*<code>GP</code>: genotype probabilities
 
*<code>GP</code>: genotype probabilities
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*the second columns contains either M (for males) or F (for females)
 
*the second columns contains either M (for males) or F (for females)
 
|-  
 
|-  
| <code>--TrimAlleles</code>
+
| <code>--trimNames</code>
 
|  
 
|  
 
indicates whether to trim alleles and variants IDs to 100 characters
 
indicates whether to trim alleles and variants IDs to 100 characters
    
Since PLINK does not allow variant IDs longer than 16,000 characters, this option can be used if variant names are too long.
 
Since PLINK does not allow variant IDs longer than 16,000 characters, this option can be used if variant names are too long.
 +
|-
 +
| <code>--trimLength</code>
 +
|
 
|}
 
|}
  
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