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, 01:47, 12 July 2017
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| == Convert to MaCH Files == | | == Convert to MaCH Files == |
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− | The following command will convert an input VCF dosage file to a MaCH/minimac dosage file (the format for previous versions of [[Minimac | minimac]]). The generated dosage files can be tested for association using [http://genome.sph.umich.edu/wiki/Mach2dat:_Association_with_MACH_output mach2dat]. | + | The following command will convert an input VCF dosage file to a MaCH/minimac dosage file (the format for previous versions of [[Minimac | minimac]]). The generated dosage files can be tested for association using tools like [http://genome.sph.umich.edu/wiki/Mach2dat:_Association_with_MACH_output mach2dat] or [http://www.genabel.org/packages/ProbABEL ProbABEL]. |
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| ./DosageConvertor --vcfDose TestDataImputedVCF.dose.vcf.gz | | ./DosageConvertor --vcfDose TestDataImputedVCF.dose.vcf.gz |