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==='''AvgCall'''===
==='''AvgCall'''===
This is the allele frequency of alternate (ALT) allele from hard-call genotypes (see [[ #Hard Genotype| '''Hard Genotype''']]) (allele with maximum posterior probability used instead of probability of alternate allele)
This is the average probability (certainty) of observing the most likely allele for each haplotype. While, the R-square is an measure of the confidence in the imputed dosages, the Average Call is a measure of confidence in the most-likely genotypes
==='''Rsq'''===
==='''Rsq'''===
