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, 22:42, 7 November 2017
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| </div> | | </div> |
| </div> | | </div> |
| + | |
| + | = Pedigree File = |
| + | |
| + | vt understands an augmented version introduced by [hmkang@umich.edu Hyun] of the PED described by [http://zzz.bwh.harvard.edu/plink/data.shtml#ped plink]. |
| + | The pedigree file format is as follows with the following mandatory fields: |
| + | {| class="wikitable" |
| + | |- |
| + | ! scope="col"| Field |
| + | ! scope="col"| Description |
| + | ! scope="col"| Valid Values |
| + | |- |
| + | |Family ID<br> |
| + | Individual ID<br> |
| + | Paternal ID<br> |
| + | Maternal ID<br> |
| + | Sex<br> |
| + | Phenotype |
| + | |ID of this family <br> |
| + | ID of this individual <br> |
| + | ID of the father <br> |
| + | ID of the mother <br> |
| + | Sex of the individual. <br> |
| + | Phenotype. |
| + | |[A-Za-z_]+<br> |
| + | [A-Za-z_]+ <br> |
| + | [A-Za-z_]+ <br> |
| + | [A-Za-z_]+<br> |
| + | 1 = male, 2 = female and other = alternative<br> |
| + | [A-Za-z_]+ |
| + | |} |
| + | |
| + | Family ID |
| + | Individual ID |
| + | Paternal ID |
| + | Maternal ID |
| + | Sex (1=male; 2=female; other=unknown) |
| + | Phenotype |
| + | |
| + | ceu NA12878 NA12891 NA12892 female |
| + | yri NA19240 NA19239 NA19238 female |
| + | |
| + | ceu NA12878,NA12878A NA12891 NA12892 female |
| + | yri NA19240 NA19239 NA19238 female |
| + | |
| + | ceu NA12878,NA12878A NA12891 NA12892 0 |
| + | yri NA19240 NA19239 NA19238 0 |
| | | |
| = Resource Bundle = | | = Resource Bundle = |