1,102
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Pedigree File
! scope="col"| Description
! scope="col"| Description
! scope="col"| Valid Values
! scope="col"| Valid Values
! scope="col"| Missing Values
|-
|-
|Family ID<br>
|Family ID<br>
Sex of the individual<br>
Sex of the individual<br>
Phenotype
Phenotype
|[A-Za-z_]+<br>
|[A-Za-z0-9_]+<br>
[A-Za-z_]+(,[A-Za-z_]+)* <br>
[A-Za-z0-9_]+(,[A-Za-z0-9_]+)* <br>
[A-Za-z_]+ <br>
[A-Za-z0-9_]+ <br>
[A-Za-z_]+<br>
[A-Za-z0-9_]+<br>
1=male, 2=female, other, male, female<br>
1=male, 2=female, other, male, female<br>
[A-Za-z_]+
[A-Za-z0-9_]+
| 0 <br>
cannot be missing <br>
0 <br>
0 <br>
other<br>
-9
|}
|}
Examples:
Examples:
ceu NA12878 NA12891 NA12892 female
ceu NA12878 NA12891 NA12892 female -9
yri NA19240 NA19239 NA19238 female
yri NA19240 NA19239 NA19238 female -9
ceu NA12878 NA12891 NA12892 2
ceu NA12878 NA12891 NA12892 2 -9
yri NA19240 NA19239 NA19238 2
yri NA19240 NA19239 NA19238 2 -9
#allows tools like profile_mendelian to detect duplicates and check for concordance
#allows tools like profile_mendelian to detect duplicates and check for concordance
ceu NA12878,NA12878A NA12891 NA12892 female
ceu NA12878,NA12878A NA12891 NA12892 female case
yri NA19240 NA19239 NA19238 female
yri NA19240 NA19239 NA19238 female control
#allows tools like profile_mendelian to detect duplicates and check for concordance
ceu NA12412 0 0 female case
yri NA19650 0 0 female control
= Resource Bundle =
= Resource Bundle =
