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, 11:30, 24 November 2009
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− | '''LaneCheck'''
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| == Basic Usage Example == | | == Basic Usage Example == |
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| The mapped .bam file may contains sequence data from different instrument runs. The read identifiers often are dot or colon-separated strings of the form 'run_name<sep>read_number'. The 'run_name' may be either an SRR / ERR identifier or the sequencing center's own alpha-numeric internal run identifier. Allow users to input extended regular expression such as '\(^[^.:]+\)[.:].*' hich matches just the part of each read identifier that is common to all reads from one instrument run and which differs between instrument runs. | | The mapped .bam file may contains sequence data from different instrument runs. The read identifiers often are dot or colon-separated strings of the form 'run_name<sep>read_number'. The 'run_name' may be either an SRR / ERR identifier or the sequencing center's own alpha-numeric internal run identifier. Allow users to input extended regular expression such as '\(^[^.:]+\)[.:].*' hich matches just the part of each read identifier that is common to all reads from one instrument run and which differs between instrument runs. |
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| 2. Use model based approach to calculate probability of lane coming from the claimed individual in the index file given a pool of individuals. | | 2. Use model based approach to calculate probability of lane coming from the claimed individual in the index file given a pool of individuals. |
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