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1 byte added, 22:30, 8 April 2019
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Use <code>{{{param|--in}}}</code> followed by your file name to specify the SAM/BAM input file.}}
The program automatically determines if your input file is SAM/BAM/uncompressed BAM without any input other than a filename from the user{{#if: {{{noStdin|}}} |.|, unless your input file is stdin.}}
{{#if: {{{noStdin|}}}|This tool does not support input from stdin.|A <code>-</code> is used to indicate to read from stdin and the extension is used to determine the file type (no extension indicates SAM).}}

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