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31 bytes added
, 23:00, 19 April 2019
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| ==Handling Recalibration/Implementation Notes== | | ==Handling Recalibration/Implementation Notes== |
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− | Recalibration is a 2-step process that loops through the file twice: | + | Recalibration is a 2-step process that loops through the file twice (stdin is not support as input): |
| # Build Recalibration Table | | # Build Recalibration Table |
| # Apply Recalibration Table | | # Apply Recalibration Table |
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| NOTE: GATK ignores/skips adapters, but our logic does not. | | NOTE: GATK ignores/skips adapters, but our logic does not. |
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| == How to use it == | | == How to use it == |