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Here <font face=Courier>refPanel.m3vcf</font> is the reference panel used in M3VCF format (e.g. 1000 Genomes), <font face=Courier>targetStudy.vcf</font> is the phased GWAS data in VCF format, and <font face=Courier>testRun</font> is the prefix for the output files.
=== Multi-Threading ===The following example shows the same analysis as above, but using 5 threads: minimac4 --refHaps refPanel.m3vcf \ --haps targetStudy.vcf \ --prefix testRun \ --cpus 5 === Full List of Options ===
Users can always type the following for further support:
minimac4 --help
