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, 22:14, 19 July 2019
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| Here <font face=Courier>refPanel.m3vcf</font> is the reference panel used in M3VCF format (e.g. 1000 Genomes), <font face=Courier>targetStudy.vcf</font> is the phased GWAS data in VCF format, and <font face=Courier>testRun</font> is the prefix for the output files. | | Here <font face=Courier>refPanel.m3vcf</font> is the reference panel used in M3VCF format (e.g. 1000 Genomes), <font face=Courier>targetStudy.vcf</font> is the phased GWAS data in VCF format, and <font face=Courier>testRun</font> is the prefix for the output files. |
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| + | === Full List of Options === |
| + | Users can always type the following for further support: |
| + | minimac4 --help |
| + | |
| + | '''Please see [[Minimac4 Documentation | Minimac4 Documentation]] for detailed explanation of all available options.''' |
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| === Convert VCF to M3VCF === | | === Convert VCF to M3VCF === |
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| --prefix testRun \ | | --prefix testRun \ |
| --cpus 5 | | --cpus 5 |
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− | === Full List of Options ===
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− | Users can always type the following for further support:
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− | minimac4 --help
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− | '''Please see [[Minimac4 Documentation | Minimac4 Documentation]] for detailed explanation of all available options.'''
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| = Reference Panels for Download = | | = Reference Panels for Download = |