From Genome Analysis Wiki
Jump to navigationJump to search
12 bytes added
, 11:11, 7 June 2010
Line 5: |
Line 5: |
| LocusZoom can be used in four ways: | | LocusZoom can be used in four ways: |
| | | |
− | ; Plot Summaries of Your Genomewide Scan Interactively | + | ; 1. Plot Summaries of Your Genomewide Scan Interactively |
| : You can upload summary results of your own genomewide scan or genomewide meta-analysis and request plots of regions of interest using a web-based form. | | : You can upload summary results of your own genomewide scan or genomewide meta-analysis and request plots of regions of interest using a web-based form. |
| | | |
− | ; Generate Many Plots in Batch Mode | + | ; 2. Generate Many Plots in Batch Mode |
| : You can upload summary results for your genomewide scan or genomewide meta-analysis and request several plots in one go by uploading a batch file. You will receive results via e-mail. A snail-mail option is not available. | | : You can upload summary results for your genomewide scan or genomewide meta-analysis and request several plots in one go by uploading a batch file. You will receive results via e-mail. A snail-mail option is not available. |
| | | |
− | ; Plot Summaries of Publicly Available Datasets | + | ; 3. Plot Summaries of Publicly Available Datasets |
| : Currently, this includes the results of [http://www.sph.umich.edu/csg/abecasis/public/lipids2008/ our genome-wide scan] for variants associated with HDL-cholesterol, LDL-cholesterol and triglyceride levels in ~20,000 individuals. | | : Currently, this includes the results of [http://www.sph.umich.edu/csg/abecasis/public/lipids2008/ our genome-wide scan] for variants associated with HDL-cholesterol, LDL-cholesterol and triglyceride levels in ~20,000 individuals. |
| | | |
− | ; Download LocusZoom and run on your local unix machine | + | ; 4. Download LocusZoom and run on your local unix machine |
| *[http://genome.sph.umich.edu/wiki/LocusZoom_Standalone Download LocusZoom] and [http://genome.sph.umich.edu/wiki/LocusZoom_Standalone#Sources_of_SQLite_database_tables associated databases] | | *[http://genome.sph.umich.edu/wiki/LocusZoom_Standalone Download LocusZoom] and [http://genome.sph.umich.edu/wiki/LocusZoom_Standalone#Sources_of_SQLite_database_tables associated databases] |
| | | |