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565 bytes added
, 11:25, 30 June 2010
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| | Tell the class which reference ID should be read from the BAM file. This is the index into the BAM Index list of reference information: 0 - #references. The records for that reference id will be retrieved on each <code>ReadRecord</code> call. When all records have been retrieved for the specified reference id, <code>ReadRecord</code> will return false until a new read section is set. | | | Tell the class which reference ID should be read from the BAM file. This is the index into the BAM Index list of reference information: 0 - #references. The records for that reference id will be retrieved on each <code>ReadRecord</code> call. When all records have been retrieved for the specified reference id, <code>ReadRecord</code> will return false until a new read section is set. |
| Pass in -1 in order to read the section of the bam file not associated with any reference ID. | | Pass in -1 in order to read the section of the bam file not associated with any reference ID. |
| + | |
| Returns true if the read section was successfully set, false if not. False is returned if the BAM Index File has not yet been read or if a BAM file is not open for reading. | | Returns true if the read section was successfully set, false if not. False is returned if the BAM Index File has not yet been read or if a BAM file is not open for reading. |
| + | |- |
| + | | <code>bool SamFile::SetReadSection(int32_t refID, int32_t start, int32_t end)</code> |
| + | | Sets what part of the BAM file should be read. Fails if this is not a BAM file &/or the index file has not yet been read. This version will set it to only read a specific reference id and start/end position. The records for this section will be retrieved on each <code>ReadRecord</code> call. When all records have been retrieved for the specified section, ReadRecord will return failure until a new read section is set. |
| + | |
| + | Return Value: true = success; false = failure. |
| |} | | |} |
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