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BamUtil

83 bytes removed, 12:01, 30 June 2010
bam Executable
The bam executable has the following functions.
* [[C++ Executable: bam#Read and Validate a SAM/BAM filevalidate|validate - Read and Validate a SAM/BAM file]]* [[C++ Executable: bam#Read a SAM/BAM file and write as a SAM/BAM fileconvert|convert - Read a SAM/BAM file and write as a SAM/BAM file]]* [[C++ Executable: bam#Print SAM/BAM headerdumpHeader|dumpHeader - Print SAM/BAM header]]* [[C++ Executable: bam#Split BAM by ChromosomesplitChromosome|splitChromosome - Split BAM by Chromosome]]* [[C++ Executable: bam#Write the alignments in the indexed BAM file that fall into the specified regionwriteRegion|writeRegion - Write the alignments in the indexed BAM file that fall into the specified region]]* [[C++ Executable: bam#Dump a BAM index filedumpIndex|dumpIndex - Dump a BAM index file into an easy to read text version]]* [[C++ Executable: bam#Read & Write indexed BAM filereadIndexedBam|readIndexedBam - Read an indexed BAM file reference by reference id -1 to 22 and write it out as a SAM/BAM file]]
This executable is built using the [[C++ Library: bam|bam library]].

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