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448 bytes added, 11:25, 14 July 2010
0 indicates not to read/validate anything.
--maxReportedErrors : Maximum number of errors to print (defaults to 100)
--disableStatistics : Turn off statistic generation
=== Usage ===
./bam validate --in <inputFile> [--noeof] [--so_flag|--so_coord|--so_query] [--quitAfterErrorNum <numErrors>] [--maxReportedErrors <numReportedErrors>] [--disableStatistics]
=== Return Value ===
=== Example Output ===
./bam validate --in t.sam --disableStatistics
The following parameters are in effect:
Input Parameters
--in [t.sam], --noeof, --quitAfterErrorNum [-1], --maxReportedErrors [100], --disableStatistics [ON]
SortOrder : --so_flag, --so_coord, --so_query
=== Statistics Generated ===
The following statistics are generated when disableStatistics option is not used:
== convert ==

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