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, 18:38, 15 July 2010
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| [[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]] | | [[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]] |
| * How to use git | | * How to use git |
− | == Unix ==
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− | == Tools ==
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− | == Resources ==
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− | [[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]]
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| Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[http://genome.sph.umich.edu/wiki/Main_Page]]). | | Git is a version control software. We have useful library codes and useful applications (see Sequence Analysis Tools section in [[http://genome.sph.umich.edu/wiki/Main_Page]]). |
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| A dedicated introduction page is here: | | A dedicated introduction page is here: |
| [[https://statgen.sph.umich.edu/wiki/How_To_Use_Git How to use git]] | | [[https://statgen.sph.umich.edu/wiki/How_To_Use_Git How to use git]] |
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− | * Tools howto - with examples - samtools, PLINK, MERLIN, bwa, etc
| + | == Unix == |
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| + | CSG Documentation [[http://csg.sph.umich.edu/docs/ AWK, BASH, UNIX commands and etc.]] |
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| + | == Tools == |
| Samtools [[http://samtools.sourceforge.net/samtools.shtml Manual]] | | Samtools [[http://samtools.sourceforge.net/samtools.shtml Manual]] |
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| BWA[[http://bio-bwa.sourceforge.net/bwa.shtml Homepage ]] | | BWA[[http://bio-bwa.sourceforge.net/bwa.shtml Homepage ]] |
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| + | == Resources == |
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| * SAM/VCF format documentation | | * SAM/VCF format documentation |
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| [[http://genome.sph.umich.edu/wiki/VCF VCF specification]] | | [[http://genome.sph.umich.edu/wiki/VCF VCF specification]] |
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− | * UNIX 101
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− | CSG Documentation [[http://csg.sph.umich.edu/docs/ AWK, BASH, UNIX commands and etc.]]
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− | * Collection of useful resources/links
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| Group Chat [[https://statgen.sph.umich.edu/wiki/Instant_Messaging instant Messaging]] | | Group Chat [[https://statgen.sph.umich.edu/wiki/Instant_Messaging instant Messaging]] |