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Introduction to new students (view source)

Revision as of 18:41, 15 July 2010

50 bytes added ,  18:41, 15 July 2010
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Introduction to New Students
 
Introduction to New Students
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== Programming ==
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= Programming =
 
* R/C++/perl/python code snipplets / toy examples of various packages
 
* R/C++/perl/python code snipplets / toy examples of various packages
 
[[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]]
 
[[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources]]
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[[https://statgen.sph.umich.edu/wiki/How_To_Use_Git How to use git]]
 
[[https://statgen.sph.umich.edu/wiki/How_To_Use_Git How to use git]]
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== Unix ==
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= Unix =
    
CSG Documentation [[http://csg.sph.umich.edu/docs/ AWK, BASH, UNIX commands and etc.]]
 
CSG Documentation [[http://csg.sph.umich.edu/docs/ AWK, BASH, UNIX commands and etc.]]
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== Tools ==
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= Tools =
 
Samtools [[http://samtools.sourceforge.net/samtools.shtml Manual]]
 
Samtools [[http://samtools.sourceforge.net/samtools.shtml Manual]]
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BWA[[http://bio-bwa.sourceforge.net/bwa.shtml Homepage ]]
 
BWA[[http://bio-bwa.sourceforge.net/bwa.shtml Homepage ]]
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== Resources ==
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= Resources =
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=SAM/VCF format documentation =
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== Sequence related info ==
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[[http://seqanswers.com/]]
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==SAM/VCF format documentation ==
    
[[http://samtools.sourceforge.net/SAM1.pdf SAM specification]]
 
[[http://samtools.sourceforge.net/SAM1.pdf SAM specification]]
Bingshan
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