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VcfCodingSnps

763 bytes added, 18:10, 12 December 2009
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1. A detailed instruction on using the table browser could be found at [http://genome.ucsc.edu/cgi-bin/hgTables?command=start#Help genome.ucsc.edu/cgi-bin/hgTables].
2. One can specify the regieon to be whole genome or any particular gene position (e.g. chr21:33031597-33041570).
 
Here is an example of input gene file headlines:
 
#name chrom strand txStart txEnd cdsStart cdsEnd exonCount exonStarts exonEnds proteinID alignID
uc001aaa.3 chr1 + 11873 14409 11873 11873 3 11873,12612,13220, 12227,12721,14409, uc001aaa.3
uc010nxq.1 chr1 + 11873 14409 12189 13639 3 11873,12594,13402, 12227,12721,14409, B7ZGX9 uc010nxq.1
uc010nxr.1 chr1 + 11873 14409 11873 11873 3 11873,12645,13220, 12227,12697,14409, uc010nxr.1
uc009vis.2 chr1 - 14362 16765 14362 14362 4 14362,14969,15795,16606, 14829,15038,15942,16765, uc009vis.2
uc009vjc.1 chr1 - 16857 17751 16857 16857 2 16857,17232, 17055,17751, uc009vjc.1
uc009vjd.2 chr1 - 15795 18061 15795 15795 5 15795,16606,16857,17232,17605, 15947,16765,17055,17368,18061, uc009vjd.2
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