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== readIndexedBam ==
== readIndexedBam ==
The <code>readIndexedBam</code> option on the bam executable reads an indexed BAM file reference id by reference id -1 to 22 and writes it out as a SAM/BAM file.
The <code>readIndexedBam</code> option on the bam executable reads an indexed BAM file reference id by reference id -1 to the max reference id and writes it out as a SAM/BAM file.
=== Parameters ===
=== Parameters ===
