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13:34, 30 July 2010
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Phred Quality is also found in a FASTQ file, described here: http://en.wikipedia.org/wiki/FASTQ_format#Quality
==== What are TAGs? ====
TAGs are optional fields on a SAM/BAM Alignment.
A TAG is comprised of a two character TAG key, they type of the value, and the value:
There are a set of predefined tags that are general used in Alignments.
A user can also use any additional tags to store any information they want.
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