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, 17:54, 30 July 2010
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| === Data File Formats === | | === Data File Formats === |
| We work with the following formats: | | We work with the following formats: |
− | * [http://en.wikipedia.org/wiki/FASTQ_format FASTQ] | + | * [http://en.wikipedia.org/wiki/FASTQ_format FASTQ] - used to store sequence reads and their quality scores |
− | * [[SAM]]/[[BAM]] | + | * [[SAM]]/[[BAM]] - used to store additional information from what is in a FASTQ file possibly including alignment information |
| * [[VCF]]: https://statgen.sph.umich.edu/wiki/VCF_4.0 | | * [[VCF]]: https://statgen.sph.umich.edu/wiki/VCF_4.0 |
| * [http://genome.sph.umich.edu/wiki/GLF GLF] | | * [http://genome.sph.umich.edu/wiki/GLF GLF] |