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C++ Class: CigarRoller

211 bytes added, 16:39, 3 August 2010
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getNumOverlaps(0,5,5) = 0 - outside of read
getNumOverlaps(32,40,5) = 0 - outside of read
getNumOverlaps(0,5,1) = 4 - with a different start position, this range overlaps the read with 4 bases
getNumOverlaps(32,40,32) = 4 - with a different start position, this range overlaps the read with 4 bases

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