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NOTE: If the TotalReads is greater than 10^6, then the Read Counts and Base Counts specify the total counts divided by 10^6. This is indicated in the output with a (e6) appended to the field name.
NOTE: If the TotalReads is greater than 10^6, then the Read Counts and Base Counts specify the total counts divided by 10^6. This is indicated in the output with a (e6) appended to the field name.
==== Example Statistics Output ====
<pre>
TotalReads(e6) 18.90
MappedReads(e6) 14.77
PairedReads(e6) 18.90
ProperPair(e6) 11.28
DuplicateReads(e6) 0.00
QCFailureReads(e6) 0.00
MappingRate(%) 78.17
PairedReads(%) 100.00
ProperPair(%) 59.68
DupRate(%) 0.00
QCFailRate(%) 0.00
TotalBases(e6) 699.30
BasesInMappedReads(e6) 546.67
</pre>
== Usage Examples ==
== Usage Examples ==
[[Sam Library Usage Examples]]
[[Sam Library Usage Examples]]
