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=== Review Sept 17th ===
 
=== Review Sept 17th ===
 
*InputFile should not use <code>long int</code>.  Should instead use: <code>long long</code>
 
*InputFile should not use <code>long int</code>.  Should instead use: <code>long long</code>
 +
*Anytime have an error could call handleError which would have a switch to return the error, throw exception, or abort.  Call it with an error code and a string.  Maybe an error handler class where you could use everywhere.  Each class would have a member of that class type that would contain that information.
 +
 
==== Review Discussion Topics ====
 
==== Review Discussion Topics ====
 
http://genome.sph.umich.edu/wiki/SAM/BAM_Library_FAQs
 
http://genome.sph.umich.edu/wiki/SAM/BAM_Library_FAQs

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