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278 bytes added, 02:36, 20 September 2010
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uint[exonCount] exonStarts; "Exon start positions"
uint[exonCount] exonEnds; "Exon end positions"
2. If gene file assumes an [ extended GenePred format], there will be an exctra "exonframe" field. Please refer to [ here] for the defination definition of "exonframe". For some genes, due to translational frame shifts or other reasons, the exonframe might notmatch what one would compute using mod 3 in counting codons. In such cases, the program will report a warning massage that "number of base pairs between code start and code end is not a multiple of three". While we will use the usual mod 3 method for counting codons. 23. A detailed instruction on using the table browser could be found at []. 34. One can specify the region to be the whole genome or any particular gene position (e.g. chr21:33031597-33041570).
Here is an example of input gene file headlines:

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