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VcfCodingSnps

602 bytes added, 02:51, 20 September 2010
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--ns parameter user defined number of kbps for the range of upstream or downstream of a gene, by default will be set t0 5
== Library Compiling Guideline ==  To Compile the source code, please first re-compile the .c functions in the library folder on your local machine: 1. Get into folder "libcsg". Type syntax "gcc -c -O2 *.cpp -D_FILE_OFFSET_BITS=32" to re-compile the c files in the library if use a 32-bit local machine (Type "gcc -c -O2 *.cpp -D_FILE_OFFSET_BITS=64" to re-compile the .c files in the library if use a 64-bit local machine) 2. In the same folder, type "ar -rc libcsg.a *.o" 3. Go to the root folder, type "make clean" and "make". (Don't need to change anything in Makefile in this step) == Input File Infomation Information ==
1. Example headlines of input VCF-format SNP file:
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