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, 12:53, 30 September 2010
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| == Performance == | | == Performance == |
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− | A good rule of thumb is that minimac should take about 1 hour to impute 1,000,000 markers in 1,000 individuals using a reference panel with 100 haplotypes. Performance should increase linearly with respect to all these factors. So, if you have M markers to impute in N individuals and a reference panel with H haplotypes, your approximate computing time in hours should be about M * N * H * 10^-11. These statistics refer to Intel X7460 CPU running at 2.66 GHz and your mileage may vary; most modern CPUs should be no more than a few times faster (or slower) than that. | + | A good rule of thumb is that minimac should take about 1 hour to impute 1,000,000 markers in 1,000 individuals using a reference panel with 100 haplotypes. Performance should increase linearly with respect to all these factors. So, if you have M markers to impute in N individuals and a reference panel with H haplotypes, your approximate computing time in hours should be about M * N * H * 10<sup>-11</sup>. These statistics refer to Intel X7460 CPU running at 2.66 GHz and your mileage may vary; most modern CPUs should be no more than a few times faster (or slower) than that. |
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| == Release Date == | | == Release Date == |