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Minimac

134 bytes added, 06:51, 7 October 2010
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Target snps (from the pre-phasing step)
--rounds R
how many iterations rounds should be run to estimate optimize the model parameters: (i) error rate for each marker (*.erate) and (ii) crossover rates (*.rec) for each interval. --states Show many haplotypes to use for parameter optimization --emuse an e-m algorithm, instead of mcmc, for parameter optimization
--rec file.rec
use crossover rates from this file
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