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, 13:33, 29 October 2010
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| + | == DESCRIPTION == |
| + | open source, freely available (GPL license), easy to use APIs |
| + | *File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout |
| + | *Common file formats – SAM/BAM, FASTQ, GLF |
| + | **Indexed access to BAM files |
| + | **Accessors to get/set values |
| + | *Utility classes, including: |
| + | **Cigar – interpretation and mapping between query and reference |
| + | **Pileup – structured access to data by individual reference position |
| + | |
| + | === Contents === |
| + | * [[StatGenLibrary: general]] - General classes for file processing and performing common tasks (used by most other libraries). |
| + | * [[StatGenLibrary: BAM]] - Classes specific for reading/writing/analyzing SAM/BAM files. |
| + | * [[StatGenLibrary: GLF]] - Classes specific for reading/writing/analyzing GLF files. |
| + | * [[StatGenLibrary: FASTQ]] - Classes specific for reading/writing/analyzing FastQ files. |
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| + | |
| + | == Download == |
| To use the StatGenLibrary, first download: | | To use the StatGenLibrary, first download: |