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C++ Library: libStatGen

843 bytes added, 13:33, 29 October 2010
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== DESCRIPTION ==
open source, freely available (GPL license), easy to use APIs
*File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
*Common file formats – SAM/BAM, FASTQ, GLF
**Indexed access to BAM files
**Accessors to get/set values
*Utility classes, including:
**Cigar – interpretation and mapping between query and reference
**Pileup – structured access to data by individual reference position
 
=== Contents ===
* [[StatGenLibrary: general]] - General classes for file processing and performing common tasks (used by most other libraries).
* [[StatGenLibrary: BAM]] - Classes specific for reading/writing/analyzing SAM/BAM files.
* [[StatGenLibrary: GLF]] - Classes specific for reading/writing/analyzing GLF files.
* [[StatGenLibrary: FASTQ]] - Classes specific for reading/writing/analyzing FastQ files.
 
 
== Download ==
To use the StatGenLibrary, first download:

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