= Trim BAM ==The <code> trimBam</code> program is released as part of the StatGen Library & Tools download.
code> trimBam< /code> trims the end of reads in a SAM/BAM file, changing read ends to ‘N’ and quality to ‘!’.
= Parameters ===
Required Parameters: inFile : the SAM/BAM file to be read outFile : the SAM/BAM file to be written num- bases- to- trim- on- each- side : the number of bases/qualities to trim from each side
= Usage === trimBam [inFile] [outFile] [num-bases-to-trim-on-each-side]
= Return Value === Returns the SamStatus for the reads/ writes. 0 on success.
=== Example Output ===
Arguments in effect: Input file : testFiles/ testSam.sam Output file : results/ trimSam.sam #TrimBases : 2
Number of records read = 10 Number of records written = 10