Changes

[[Category:Software]]

[[Category:Software]]

[[Category:C++]]

[[Category:C++]]

[[Category:libbam]]

[[Category:BAM Classes]]

= SAM/BAM File=

= SAM/BAM File=

See [[C++ Library: libbam Change Log]] for a list of the most recent updates to the library.

See [[C++ Library: BAM Change Log]] for a list of the most recent updates to the BAM classes.

[[BAM Review Action Items]]

[[BAM Review Action Items]]

== Read & Write BAM/SAM Library ==

== Read & Write BAM/SAM Library Software ==

The software reads the beginning of files opened for reading to determine if it is SAM/BAM.  To determine the format (SAM/BAM) of files open for writing, the software checks the output file's extension.  If the extension is "bam" it writes a BAM file, otherwise it writes a SAM file.

The software reads the beginning of files opened for reading to determine if it is SAM/BAM.  To determine the format (SAM/BAM) of files open for writing, the software checks the output file's extension.  If the extension is "bam" it writes a BAM file, otherwise it writes a SAM file.

The library is found in pipeline/bam, and is called libbam.a.

The library is found in statgen/lib/bam.

=== BAM/SAM Classes ===

 

 

=== Classes in the BAM/SAM Library ===

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== FAQs ==

== FAQs ==

[[SAM/BAM Library FAQs]]

[[SAM/BAM Classes FAQs]]

== Usage Examples ==

== Usage Examples ==

== Suggested Improvements/Features ==

== Suggested Improvements/Features ==

See [[C++ Library: libbam Change Log#Known Issues|Change Log]]

See [[C++ Library: BAM Change Log#Known Issues|Change Log]]