Changes

VcfCooker (view source)

74 bytes added , 00:11, 12 November 2010

Line 40: Line 40:

* depth will be changed to DP in the INFO field

* mapQ will be changed to MQ in the INFO field

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* MAF will be changed to AF in the INFO field, with proper changes if needed.

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* MAF will be changed to AF (AlleleFrequency) in the INFO field, with proper changes if needed.

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* NS will be added as a new INFO field

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* NS (NumSamples) will be added as a new INFO field

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* AC will be added as a new INFO field

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* AC (AlleleCount) will be added as a new INFO field

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* AN will be added as a new INFO field

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* AN (NumAlleles) will be added as a new INFO field

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* AB will be added as a new INFO field (suggested by Tom Blackwell at [[Genotype_Likelihood_Based_Allele_Balance]])

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* AB (AlleleBalance) will be added as a new INFO field (suggested by Tom Blackwell at [[Genotype_Likelihood_Based_Allele_Balance]])

== Filtering a VCF file ==

1,120

edits