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MaCH: machX

281 bytes added, 09:49, 26 November 2010
Impute
=== Impute ===
 
Imputation will then be performed on the phased haplotypes using minimac [http://genome.sph.umich.edu/wiki/Minimac].
 
minimac --refHaps ref.hap.gz --refSnps ref.snps --haps sample.phased.gz --snps sample.snps --rounds 5 --states 200 --prefix sample.imputed > sample.imputed.log
== FAQ ==
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