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→Impute
=== Impute ===
Imputation will then be performed on the phased haplotypes using minimac [http://genome.sph.umich.edu/wiki/Minimac].
minimac --refHaps ref.hap.gz --refSnps ref.snps --haps sample.phased.gz --snps sample.snps --rounds 5 --states 200 --prefix sample.imputed > sample.imputed.log
== FAQ ==
