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BamUtil: filter

3 bytes removed, 18:16, 9 December 2010
Mismatch Threshold
This base will be clipped since 1 is > than the mismatch threshold (assuming that wasn't set to 1).
If the first base is a mismatchmatch, it is
:<math>{0 \over 1 + 0} = {0 \over 1} = 0</math>
At this point, this base will not be clipped since it is not greater than the mismatch threshold.

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